PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g079180.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 415aa    MW: 47125.7 Da    PI: 4.6757
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g079180.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.81.1e-30931852103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k+ye+l d ++k+lisws+ng+sf+++d+++fa +vLp++F+h+n++SFv QLn YgFkkv+ ++          eF+h+ F++gk +
  Sopim02g079180.0.1  93 FVLKIYEMLADIQFKSLISWSNNGTSFIIHDNHKFAVDVLPRFFRHNNISSFVCQLNSYGFKKVSWDK---------FEFRHDCFQRGKGQ 174
                         9*****************************************************************99.........67************ PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                          l++ikrk s+
  Sopim02g079180.0.1 175 WLRNIKRKISK 185
                         *******9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.5E-3889182IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3090182IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-2891182IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.7E-2793182IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-1393116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-13131143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-13144156IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
METEGGKGKG KMTEIDDIVE ALGESYEGLE DVHIDISMLE YGDDNDDDNQ CDNRSNEVNH  60
GNAAAVAATP TTPRELFSSS SNRRNFQRRA SPFVLKIYEM LADIQFKSLI SWSNNGTSFI  120
IHDNHKFAVD VLPRFFRHNN ISSFVCQLNS YGFKKVSWDK FEFRHDCFQR GKGQWLRNIK  180
RKISKSQMNE QSTERQAIDE TVAFTMEKEI EEIRAEQVTM REEIMMLQRQ LDVLEKEMED  240
INQAGSNMSS KKAKICMILF NSLFACTRGI DSTEVAEEQG GEVEDGVENS GKGNRGKKRK  300
MLVVEELEGV NEGRKKGNPG KERKMQVIEE LEGDNEGRKK IADAADFKTG SYLGRMLMDE  360
MNLNNLDQEQ PDNFLESEEL AGSSTFWTDY VEKMDHKAIR GVDPALSLSQ EIPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D1e-239318429131Heat shock factor protein 1
5d5v_B1e-239318429131Heat shock factor protein 1
5d5u_B1e-239318429131Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153650.0AC215365.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0031A21, complete sequence.
GenBankAC2154020.0AC215402.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0161P02, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010316675.10.0PREDICTED: heat stress transcription factor A-1b-like
TrEMBLK4B9E20.0K4B9E2_SOLLC; Uncharacterized protein
STRINGSolyc02g079180.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140991213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-29heat shock transcription factor A3